PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000933329
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 201aa    MW: 21918.9 Da    PI: 7.5034
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000933329genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000494463120
                   EEETTTTEEESSHHHHHHHH CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                   y+Cp+C+k++ +   +  H 
  MDP0000933329 44 YECPICHKVYESAQVFSAHT 63
                   99*********999999996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MSRVHADNDA VQEGLQPLDV EILSHLGADG RIHSLHRXGP XEWYECPICH KVYESAQVFS  60
AHTGIHYRAL STAXNXIRLH RXHDKELQNN KLQLQEFDXG SVVVVPVNPT STVAKKKINL  120
LDDGVDALGG ESDHRNGTDL VVGRQDHHAS TSNHEWVRAK KRRARALGVG GIAAPKSGRG  180
HDDNVKSSPV VAPQEHSGCP *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18490.11e-06C2H2-like zinc finger protein